SEEK ID: https://nextseek-dev.mit.edu/sops/49?version=1
Filename: Collagen_RNAseq.docx
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Created: 22nd Jan 2026 at 16:19
Last updated: 22nd Jan 2026 at 16:19
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Version 1 (earliest) Created 22nd Jan 2026 at 16:19 by Demo Demo
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Projects: Published Data
Institutions: BMC-BioMicro Center (MIT)
Auto-created investigation: Shoulders
Submitter: Demo Demo
Studies: Failed cellular surveillance enables pathogenic matrix deposition in a C...
Assays: Cell Imaging - Data Linked, Gene Expression Analysis - Data Linked, LC - MS/MS (Proteomics) - Data Linked, Library Creation - Metadata, Proteomics Analysis - Data Linked, RNA Extraction - Metadata, Short Read Sequencing - Data Linked, iPSC Culture and Chondronoid Formation - Metadata
Snapshots: No snapshots
Kathryn M. Yammine, Sophia Mirda Abularach, Michael Xiong, Seo-yeon Kim, Agata A. Bikovtseva, Vincent L. Butty, Richard P. Schiavoni, John F. Bateman, Shireen R. Lamandé, and Matthew D. Shoulders
A dbGaP Submission is underway and metadata will be updated at the completion of submission. The remaining of the data and metadata are available here.

DOI: 10.1101/2024.11.07.622468.
Abstract:
Objectives Mutations in the procollagen-II gene (COL2A1) ...
Submitter: Demo Demo
Investigation: Shoulders
Assays: Cell Imaging - Data Linked, Gene Expression Analysis - Data Linked, LC - MS/MS (Proteomics) - Data Linked, Library Creation - Metadata, Proteomics Analysis - Data Linked, RNA Extraction - Metadata, Short Read Sequencing - Data Linked, iPSC Culture and Chondronoid Formation - Metadata
Snapshots: No snapshots
Submitter: Demo Demo
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Shoulders
Organisms: No organisms
SOPs: P.SHO-250605-V1_Collagen_Imaging.docx, P.SHO-250605-V1_Collagen_Proteomics.docx, P.SHO-250605-V1_Collagen_RNAseq.docx, P.SHO-250605-V1_Collagen_iPSC.docx
Data files: No Data files
Snapshots: No snapshots
Submitter: Demo Demo
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Shoulders
Organisms: No organisms
SOPs: P.SHO-250605-V1_Collagen_RNAseq.docx
Data files: No Data files
Snapshots: No snapshots
Submitter: Demo Demo
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Shoulders
Organisms: No organisms
SOPs: P.SHO-250605-V1_Collagen_RNAseq.docx
Data files: No Data files
Snapshots: No snapshots
Submitter: Demo Demo
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Shoulders
Organisms: No organisms
SOPs: P.SHO-250605-V1_Collagen_RNAseq.docx
Data files: No Data files
Snapshots: No snapshots
Submitter: Demo Demo
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Shoulders
Organisms: No organisms
SOPs: P.SHO-250605-V1_Collagen_RNAseq.docx
Data files: No Data files
Snapshots: No snapshots
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